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ZHIFA LIU

how to set up stack-size to unlimited in PBS pro

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Dear all
 
 
We have met a PBS pro system limit for stack size in our HPC running. We found that all the jobs were submitted by PBS pro have a stack size limit to 16384.
 
There should be a configuration file in PBS pro so that we can remove this restriction and get unlimited stack size.
 
Even we changed in our .bashrc file to ulimit -s unlimited, it is still the same for 16384 limit
 
 
For each computing node, we found that there is some content such as "ulimit -n 16384" in the limits.pbs_mom file 
 
[hpc@computenccoshab0000 init.d]$ cat /opt/pbs/lib/init.d/limits.pbs_mom
#       This file will be sourced by the PBS startup script, pbs_init.d.
#       It is here only for binary compatibility with previous releases.
#       Feel free to replace its contents.
if [ -f /etc/sgi-release -o -f /etc/sgi-compute-node-release ] ; then
    MEMLOCKLIM=`ulimit -l`
    NOFILESLIM=`ulimit -n`
    STACKLIM=`ulimit -s`
    ulimit -l unlimited
    ulimit -n 16384
    ulimit -s unlimited
fi
 
Is there any solution in PBS Pro to set up to ulimit -s unlimited?
 
Many thanks
 
 

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